Saturday, 9 February 2013

A new selective inhibitor of Histone Deacetylase 6

Chemotherapy, treatment of cancer with drugs, requires the development of compounds which have the effect of slowing tumour growth, stopping growth all together or even causing death to cancer cells within the tumour. Generally, compounds can either act to positively stimulate a response within cells or to inhibit one or more processes. These compounds will normally be designed to target a single protein or multiple proteins in the same family. There are advantages and disadvantages to targeting more than one protein: on the plus side you may help kill cancer cells by stopping several proteins in the same signalling pathway or prevent more than one pathway, on the downside you can increase the chance that the compound will also target non-cancerous cells and increase side effects for patients. One way to lessen this effect is to try and specifically target the compound to only the tumour thus limiting its effects on surrounding healthy cells, an alternative is to make the compound more specific for its intended target and reduce off-target effects. Compounds that not only show these properties, but also enter the body easily, are absorbed at a desirable rate and are successfully cleared from the body without creating dangerous metabolites, are likely to make suitable drugs. Here is where the fields of drug design, pharmacology and cancer research combine in an attempt make more effective therapeutic agents for the treatment of cancer.

Drug development can take several approaches, firstly there are a number of compounds that exist in nature such as the anti-cancer drug Taxol which was found in the Pacific Yew tree Taxus brevifolia in the late 1960s. Often, but not always, chemists can find ways to make these natural products from reactions between other chemicals, increasing the amount of drug that can be produced from these sometimes rare natural products. Additionally, once the chemical structure of these natural products is known, medicinal chemists can make small changes to a compound's structure and look to see what effect this has on the anti-cancer activity of the resulting compounds, this is called structure activity relationship (SAR). These methods are the usual route of drug discovery by academic groups, however in the pharmaceutical industry vast libraries of compounds which have drug-like properties are screened for interactions with desired target proteins, or their ability to stop cancer cell growth. This effort is called high throughput screening (HTS), it is expensive but often finds compounds which can undergo SAR to finally produce potential drugs.

Kaliszcak and colleagues recently developed an anti-cancer drug based on two natural inhibitors of a class of proteins called histone deacetylases (HDACs). I mentioned in a previous post that DNA is tightly held together in a structure called chromatin, to build chromatin DNA is wound around proteins called histones. These histones can be modified by adding acetyl groups which loosens the chromatin structure making DNA more accessible, HDACs can remove these acetyl groups causing DNA to become more tightly wound and inaccessible. HDACs also target proteins other than histones for deacetylation such as alpha-tubulin, a protein involved in the cell cycle that can be acetylated. The HDAC6 inhibitor prevented the deacetylation of alpha-tubulin by HDAC6 and caused an increase in the levels of the acetylated form. This effect on alpha-tubulin makes inhibiting HDACs, including HDAC6, a potential treatment for cancer. However, many current HDAC inhibitors are very unspecific and have serious side effects. The inhibitor developed by Kaloszcak and colleagues targets HDAC6 but at much lower concentrations of drug than required to target other HDACs such as HDAC1, suggesting it is more selective for HDAC6. This inhibitor had potent anti-cancer effects, causing a reduction in the growth of a wide variety of cancer cell types including: breast, colon, lung, ovarian and prostate cancer. 

The group also showed that their HDAC6 inhibitor caused cancer cells to undergo cell death. They did this by measuring the DNA content of cells after treatment with their HDAC6 inhibitor; DNA content decreased, a sign that cells are undergoing cell death. They noticed that proteins called caspases, important in a specific type of controlled cell death called apoptosis, were increased. Finally, when used in a mouse model of cancer, these inhibitors worked to reduce tumour growth with no general toxicity suggesting this HDAC6 inhibitor may do well if transferred into human clinical trials. 

Mentioned Articles

Kaliszczak M, Trousil S, Aberg O, Perumal M, Nguyen QD, Aboagye EO. (2013)
Br J Cancer. 2013 Feb 5;108(2):342-50. doi: 10.1038/bjc.2012.576. Epub 2013 Jan 15.

Cancerresearchuk.org (2009) Paclitaxel (Taxol) : Cancer Research UK : CancerHelp UK. [online] Available at: http://www.cancerresearchuk.org/cancer-help/about-cancer/treatment/cancer-drugs/paclitaxel [Accessed: 9 Feb 2013].

Aldana-Masangkay GI, Sakamoto KM.(2011)
J Biomed Biotechnol. 2011;2011:875824. doi: 10.1155/2011/875824. Epub 2010 Nov 7.

Gryder BE, Sodji QH, Oyelere AK (2012)
Future Med Chem. 2012 Mar;4(4):505-24. doi: 10.4155/fmc.12.3.

Annunziato, A. (2008) 
Nature Education 1(1)


Wednesday, 6 February 2013

Let-7 prevents an agressive shift towards EMT in breast cancer cells

I have written previously about examples of transcription factors (Twist) which can bind DNA to help the initiation of transcription, and chromatin re-remodelling factors (FOXA1) which can constrict or release tightly wound DNA. Transcription makes a copy of DNA called messenger RNA, this contains the gene tic information coding for the protein to be made, as well as regions before and after that gene DNA. When the human genome was sequenced a large proportion of our DNA was discovered to not code for specific genes and was termed “junk DNA”. The recent ENCODE project was a massive effort to study the human genome in more detail, interestingly they found that most of this “junk DNA” actually has a function. So what does this DNA do? Some of the DNA codes for microRNAs, these are small pieces of RNA which can negatively regulate the second major step of making protein, translation. These microRNAs contain a “seed” sequence which can share similarity with one or more messenger RNA sequences, microRNAs help guide cellular machinery to messenger RNA that prevents it from being translated into protein. The numbers of different microRNAs present in cells can therefore have a dramatic effect on the levels of many proteins in the cell, including those for processes such as cell growth and cell survival. Cancer cells exhibit changes in microRNA levels which allows them to alter protein expression to increase growth and avoid cell death.

Let-7 was discovered in a species of roundworm called Caenorhabditis elegans and is one of the first observed microRNAs; it is also expressed in mammalian cells such as humans and has been investigated in the context of cancer. Let-7, along with another microRNA miR-200, has been shown to control the epithelial to mesenchymal transition (EMT) in breast cancer cells, a process mentioned here in a previous blog post. A recent study by Guo and colleagues looked at a protein called oncostatin M, which is released by breast cancer cells and can cause them to undergo metastasis through EMT. They first show that oncostatin M is indeed present in breast cancer cells. Next, they take breast cancer cells that show low levels of oncostatin M that are less aggressive and treat them with oncostatin M, this makes them undergo EMT and become more motile and better at invading into a substance called Matrigel which mimics human tissue. When cells were treated with oncostatin M levels of the microRNAs Let-7 and miR-200 were reduced suggesting that they may negatively regulate oncostatin M induced EMT. To test this, the group artificially raised levels of both these microRNAs which as expected reduced the effect of oncostatin M to cause EMT. Additionally, preventing the action of Let-7, but interestingly not miRNA200, resulted in an increase in EMT.

Finally, the group probed the potential pathway of proteins involved in the Let-7  and miR200 dependent repression of oncostatin M induced EMT. They showed that a protein called HMGA2 is the “master regulator” of oncostatin M induced EMT, and is targeted by Let-7 microRNA. To increase HMGA2 protein levels in cancer cells and induce EMT, Let-7 levels are reduced by a protein called Lin28. Oncostatin M increases Lin28 levels through the transcription factor Stat3.This pathway is important for the initiation of EMT in breast cancer cells, whereas miR200 is directly inhibited by Stat3 allowing an increase in the levels of a miR200 target protein ZEB1. ZEB1 is a transcription factor important in initiation and maintenance of EMT. This study has therefore revealed that Let-7 and miR200 microRNAs act as brakes to prevent  cells undergoing EMT. By utilising a Stat3 signalling pathway, cancer cells can overcome this brake and become more aggressive by entering into EMT.

Mentioned Articles

Guo L, Chen C, Shi M, Wang F, Chen X, Diao D, Hu M, Yu M, Qian L, Guo N. (2013)
Stat3-coordinated Lin-28-let-7-HMGA2 and miR-200-ZEB1 circuits initiate and maintain oncostatin M-driven epithelial-mesenchymal transition.
Oncogene. 2013 Jan 14. doi: 10.1038/onc.2012.573. [Epub ahead of print]

Iorio MV, Croce CM.(2012)
Causes and consequences of microRNA dysregulation.
Cancer J. 2012 May-Jun;18(3):215-22. doi: 10.1097/PPO.0b013e318250c001.

Peter ME. (2009)
Let-7 and miR-200 microRNAs: guardians against pluripotency and cancer progression.
Cell Cycle. 2009 Mar 15;8(6):843-52. Epub 2009 Mar 22.

Sunday, 3 February 2013

FOXA1 is a gatekeeper, as well as a marker, for less aggressive breast cancer

Breast cancer is a complex disease, comprising of several recognised subtypes which can be distinguished by factors including the signature of the proteins within the tumour cells. Two such subtypes include luminal and basal breast cancer, the latter is more agressive and has a poorer prognosis for patients. Recent work has suggested that basal breast cancer cells may arise from luminal cells, although the mechanism for this is unclear.

A protein called FOXA1 may be the key to this transformation and Bernardo and colleges explore this in a recent paper in the journal Oncogene. The double helix is the basic structure of DNA (although exciting research from a group in Cambridge has identified four stranded DNA helices in cancer cells). Proteins and modifications to the double helix DNA compact it within the nucleus of the cell into a tightly wound structure known as chromatin. Like transcription factors such as twist, chromatin re-modellers including FOXA1, are capable of altering which genes are turned on and subsequently made into proteins. But chromatin re-modellers do this by altering the structure of chromatin, making the genes in DNA less or more accessible and in turn changing which proteins are made. Changing levels of FOXA1 in cells can therefore have dramatic results on the pattern of proteins, this can lead to changes in the function of those cells.

The group first took breast cancer cells which represent either luminal or basal subtypes and measured how much FOXA1 was present. In agreement with previous studies, luminal breast cancer cells had high levels of FOXA1, whereas this protein was almost undetectable in basal breast cancer cells. The researchers then took luminal breast cancer cells, artificially reduced the levels of FOXA1 and measured which genes were being transcribed (the first stage in making proteins of genes). This gives a fingerprint of all the genes turned on or off in a cell, called the "transcriptome". Interestingly, the loss of FOXA1 in luminal cells led to a decrease in luminal genes and an increase in basal genes switched on. This change from a luminal to basal gene signature with loss of FOXA1 expression was accompanied by increased motility and invasiveness of breast cancer cells.

FOXA1, therefore acts to prevent the conversion from a luminal to basal type breast cancer, and therefore limits the agressiveness of the tumour. This study supports the evidence that FOXA1 expression marks a less aggressive form of breast cancer with better prognosis, however it also suggests that efforts to target FOXA1 as a treatment for luminal breast cancers may have serious unwanted consequences such as increasing aggressiveness.


Mentioned Articles
Bernardo GM, Bebek G, Ginther CL, Sizemore ST, Lozada KL, Miedler JD, Anderson LA, Godwin AK, Abdul-Karim FW, Slamon DJ, Keri RA. (2013)
FOXA1 represses the molecular phenotype of basal breast cancer cells.
Oncogene. 2013 Jan 31;32(5):554-63. doi: 10.1038/onc.2012.62. Epub 2012 Mar 5.

Yamaguchi N, Ito E, Azuma S, Honma R, Yanagisawa Y, Nishikawa A, Kawamura M, Imai J, Tatsuta K, Inoue J, Semba K, Watanabe S. (2008)
FoxA1 as a lineage-specific oncogene in luminal type breast cancer.
Biochem Biophys Res Commun. 2008 Jan 25;365(4):711-7. Epub 2007 Nov 26. [Abstract and figures free]

Thorat MA, Marchio C, Morimiya A, Savage K, Nakshatri H, Reis-Filho JS, Badve S. (2008)
Forkhead box A1 expression in breast cancer is associated with luminal subtype and good prognosis.
J Clin Pathol. 2008 Mar;61(3):327-32. Epub 2007 Nov 23. [Abstract only free]
Cam.ac.uk (2013) Four-stranded ‘quadruple helix’ DNA structure proven to exist in human cells - Research - University of Cambridge. [online] Available at: http://www.cam.ac.uk/research/news/four-stranded-quadruple-helix-dna-structure-proven-to-exist-in-human-cells/ [Accessed: 3 Feb 2013].

Phillips, T. & Shaw, K. (2008) Chromatin remodeling in eukaryotes. Nature Education 1(1)

Thursday, 31 January 2013

A subset of T cells provide new insight into the mechanism of Graft Versus Host Disease

The term leukemia covers a range of haematological malignancies (cancers of blood cell origin). Patients can be treated by radiation or multi-drug chemotherapy. Recent research has focused on single agent therapeutics for use alone, or in combination with established treatments. Even difficult to treat leukemias such as chronic lymphocytic leukemia (CLL) have seen advances

However, the treatment of haematological malignancies usually involves high doses of chemo- and radio-therapy, which kills cancerous blood cells but also affects the body's ability to repopulate the blood with healthy white blood cells. To combat this, cancer treatment can be followed up with a replacement of the bone marrow or blood stem cells by transplantation from a donor. One very unfortunate side effect of this transplantation is the response of the transplanted (graft) cells to the host cells, this is known as Graft Versus Host Disease (GVHD). To treat GVHD, patients are given drugs to suppress the graft cell immune response, however these drugs can have severe side effects.

A very interesting research article published in the journal PLoS One, by van der Waart et al from The Netherlands, addresses one mechanism by which GVHD develops in patients treated for haematological malignancies by stem cell transplantation.

A recently discovered subtype of white blood cells, T cells called Th17 cells which produce a small signalling protein called IL-17, have been implicated in GVHD. This present study assessed the white blood cell content of patients with a range of haematological malignancies treated in the manner described above. They found that a subpopulation of Th17 cells which had high levels of the protein CD161 on their surface were resistant to the  effects of immuno suppressive drug treatment. These cells are protected by expression of a transporter on their surface (ABCB1) that removes the drug which would normally prevent their growth.

An interesting observation was that in patients with GVHD the number of CD161 expressing cells in the blood was decreased. The study goes on to show that in fact these cell relocate from the blood to tissue sites where GVHD is visible. These cells are able to respond to a small signalling protein, a chemokine called CCL20, which is enriched in tissue from patients with GVHD and  potentially pulls these cells from the blood into the tissue. An elegant use of an imaging technique known as immuno fluorescence, showed that the cells found in GVHD tissue indeed contains cells which are T cells expressing high levels of CD161 on their surface as well, as the protein which recognises CCL20.

This study provides two observations that could be potentially beneficial for the management of GVHD: a decrease in the number of CD161 expressing white blood cells in the blood of patients following reconstitution by stem cell transplantation may act as a marker for patients likely to develop GVHD. Additionally, further understanding of the role of this subset of T cells in GVHD may give rise to novel treatments for the management of GVHD.

Mentioned Articles

van der Waart AB, van der Velden WJ, van Halteren AG, Leenders MJ, Feuth T, Blijlevens NM, van der Voort R, Dolstra H. (2012)
Decreased levels of circulating IL17-producing CD161+CCR6+ T cells are associated with graft-versus-host disease after allogeneic stem cell transplantation.
PLoS One. 2012;7(12):e50896. doi: 10.1371/journal.pone.0050896. Epub 2012 Dec 4.

Cancerresearchuk.org (2009) About graft versus host disease (GVHD) : Cancer Research UK : CancerHelp UK. [online] Available at: http://www.cancerresearchuk.org/cancer-help/coping-with-cancer/coping-physically/gvhd/about-graft-versus-host-disease [Accessed: 31 Jan 2013].


Breast cancer cells TWIST macrophages to aid blood vessel growth

Epithelial to mesenchymal transition (EMT) is a process where epithelial cells, those that form tissues of our major organs such as the lungs, gut, skin and breast can transform into mesenchymal cells. This transition causes the cells to take on a more motile and flexible pattern of behaviour. EMT is a crucial process in the initial development of the human body and also helps to repair damaged tissue following wounds. However, cancer cells are also able to exploit the process of EMT to help them to help them leave the mass of epithelial cells forming the primary tumour and move to distant secondary sites.

The processes that regulate EMT during development are highly regulated, this is achieved in part by small proteins called transcription factors. Transcription factors interact with DNA and recruit machinery that controls when genes are made into the proteins, which ultimately bring about changes within the cell. Three transcription factors particularly important in EMT during development are: Slug, Snail and Twist; recently these proteins have begun to be investigated in the context of cancer. They are often up-regulated in cancer and their presence in tumours may indicate a poor survival rate for patients. They promote cancer mainly through their effects on proteins involved in EMT, and much research is being currently undertaken with this aspect in mind.

However, a study published this month in the journal Cancer Research by Low-Marchelli and colleagues describes a novel function for Twist in the way in which cancer cells recruit blood vessels. This process, termed angiogenesis, is required to give a tumour sufficient blood to continue to grow. Normal breast epithelial cells do not express detectable levels of Twist, but when Twist is artificially added to these cells they are better at encouraging blood vessel growth.

While looking for the mechanism by which Twist increases angiogenesis, the group found that Twist expressing breast cells released more of one particular signalling protein, CCL2, than normal breast cells. This CCL2 was shown to be required for the promotion of blood vessel growth by Twist; interestingly this was independent of Twist’s role in EMT. CCL2 belongs to a group of proteins called chemokines which act to attract other cells to move towards their source, in this case the breast cancer cells. The cells which are attracted to this CCL2 are an immune cell called macrophages, cells which are normally required for the removal of damaged, infected or even cancerous cells. However, the signalling molecules released by macrophages can also promote tumour growth directly as well as promoting stages of blood vessel development.

In conclusion, this study has elegantly revealed a mechanism where Twist in breast cancer cells can cause increased CCL2 levels to attract macrophages and promote blood vessel growth. This is an interesting new facet to Twist biology, adding further complexity to its role in cancer.

Mentioned Articles

Low-Marchelli JM, Ardi VC, Vizcarra EA, van Rooijen N, Quigley JP, Yang J. (2013)
Twist1 Induces CCL2 and Recruits Macrophages to Promote Angiogenesis
Cancer Res. 2013 Jan 15;73(2):662-71. doi: 10.1158/0008-5472.CAN-12-0653.

Shioiri M, Shida T, Koda K, Oda K, Seike K, Nishimura M, Takano S, Miyazaki M. (2006)
Br J Cancer. 2006 Jun 19;94(12):1816-22. doi:10.1038/sj.bjc.6603193

J Exp Clin Cancer Res. 2010 Sep 1;29:119. doi: 10.1186/1756-9966-29-119.



Loss of Fam38 gets SCLC moving

Small cell lung cancer (SCLC) is a very aggressive form of lung cancer; response of patients to the initial chemotherapy is good, however in most cases the cancer reoccurs and progresses. A key step in progression of advanced cancer is the breaking away of a number of cells from the original tumour which move through the body and act as a seed for new tumours in areas such as the lymph nodes. This process, termed metastasis requires cells of the original tumour to take up a more invasive pattern of cell movement. The way in which cells move is a complicated and highly regulated process, cancers hijack this processes to their own end: metastasis. 

The majority of solid tumours rely on a combination of proteins called integrins, which regulate how well one cell sticks to other cells at it moves across them, and a group of enzymes which break up and remodel the environment surrounding the tumour. However, a recent study by McHugh et al. from Edinburgh MRC and Kings College London has shown that SCLC can adopt a vastly different method of cell movement.
Normal lung cells express high levels of a protein called Fam38, this protein is involved in integrin regulation for cellular movement. A key initial observation by the group was that SCLC cells, in contrast, have very low levels of Fam38. In normal lung cells McHugh and colleagues artificially reduced Fam38 levels to a similar degree as seen in SCLC cells and looked to see what changes Fam38 loss caused. These cells showed a remarkable loss of dependence on integrins for their movement and consequently were less able to stick to other cells. 

Cells lacking Fam38 adopted a different method of movement which allowed them to move faster over a two-dimensional area and further through a three-dimensional tissue-like substance. This increased invasiveness following Fam38 loss may explain why, in part, SCLC is so aggressive and difficult to treat.
Drug discovery for treatment of the most common form of lung cancer, non-small cell lung cancer (NSCLC), has advanced quicker than for SCLC. With the discovery of the role of Fam38 in SCLC a potential new therapeutic target has been found. Further research is required, but watch this space!

Mentioned Articles:

McHugh BJ, Murdoch A, Haslett C, Sethi T (2012) Loss of the Integrin-Activating Transmembrane Protein Fam38A (Piezo1) Promotes a Switch to a Reduced Integrin-Dependent Mode of Cell Migration. PLoS ONE 7(7): e40346. doi:10.1371/journal.pone.0040346